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, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJA, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C: InterPro: the integrative protein signature database. Nucleic Acids Res Jan, (Database concern):D– Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O: TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological course of action in prokaryotic genomes. Nucleic Acids Res , (Database concern): D.Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, Ahren D, Tsoka S, Darzentas N, Kunin V, Lopez-Bigas N: Expansion of your BioCyc collection of pathwaygenome databases to genomes. Nucleic Acids Res , :.Aoki KF, Kanehisa M: Applying the KEGG database resource. Curr Protoc Bioinformatics Oct, Chapter :Unit E-982 web Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH: CDD: precise functional annotation with the Conserved Domain Database. Nucleic Acids Res Jan, (Database problem):D–.Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW: GenBank. Nucleic Acids Res Jan, (Database concern):D–.Li W, Godzik A: Cd-hit: a speedy system for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics , :.Tian W, Skolnick J: How nicely is enzyme function conserved as a function of pairwise sequence identity J Mol Biol , :.Wang G, Dunbrack RLJr: PISCES: a protein sequence culling server. Bioinformatics , :.Lindberg DA, Humphreys BL, McCray AT: The Unified Medical Language Technique. Methods Inf Med , :.Rosse C, Mejino JLVJr: A reference ontology for biomedical informatics: the Foundational Model of Anatomy. J Biomed Inform , :.Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, purchase DEL-22379 Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet , :.Boser BE, Guyon I, Vapnik V: A Coaching Algorithm for Optimal Margin Classifiers. In COLT. Pittsburgh, PA USA; :.Hoerl A: Application of Ridge Evaluation to Regression Issues. Chem Engr Prog , :-.Cover T, Hart P: Nearest neighbor pattern classification. IEEE Trans Inform Th , :.Ben-Hur A, Noble WS: Kernel methods for predicting protein-protein interactions. Bioinformatics , (Suppl):i–.Chen YW, Lin PubMed ID:http://www.ncbi.nlm.nih.gov/pubmed/24719379?dopt=Abstract CJ: Combining SVMs with Many Feature Choice Approaches. In Function Extraction: Foundations and Applications, ume of Research in Fuzziness and Soft Computing: Springer;. Chang CC, Lin CJ: LIBSVM: A Library for Assistance Vector Machines. ACM Trans Intell Syst Technol , :.Cadag E, Louie B, Myler PJ, Tarczy-Hornoch P: BioMediator Data Integration and Inference for Functional Annotation of Anonymous Sequences. In Pacific Symposium on Biocomputing. Edited by Altman RB, Dunker AK, Hunter L, Murray T, Klein T E: Globe Scientific; :.Liao L, Noble WS: Combining pairwise sequence similarity and support vector machines for remote protein homology detection. In RECOMB. Washington, DC USA; :.Ben-Hur A, Brutlag D: Remote homology detection: a motif based approach. Bioinformatics , (Suppl):i–.Lanckriet GRG, De Bie T, Cristianini N, Jordan MI, Noble., McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJA, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C: InterPro: the integrative protein signature database. Nucleic Acids Res Jan, (Database challenge):D– Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O: TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological course of action in prokaryotic genomes. Nucleic Acids Res , (Database problem): D.Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, Ahren D, Tsoka S, Darzentas N, Kunin V, Lopez-Bigas N: Expansion with the BioCyc collection of pathwaygenome databases to genomes. Nucleic Acids Res , :.Aoki KF, Kanehisa M: Utilizing the KEGG database resource. Curr Protoc Bioinformatics Oct, Chapter :Unit Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH: CDD: specific functional annotation together with the Conserved Domain Database. Nucleic Acids Res Jan, (Database issue):D–.Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW: GenBank. Nucleic Acids Res Jan, (Database concern):D–.Li W, Godzik A: Cd-hit: a rapid program for clustering and comparing significant sets of protein or nucleotide sequences. Bioinformatics , :.Tian W, Skolnick J: How well is enzyme function conserved as a function of pairwise sequence identity J Mol Biol , :.Wang G, Dunbrack RLJr: PISCES: a protein sequence culling server. Bioinformatics , :.Lindberg DA, Humphreys BL, McCray AT: The Unified Healthcare Language Program. Methods Inf Med , :.Rosse C, Mejino JLVJr: A reference ontology for biomedical informatics: the Foundational Model of Anatomy. J Biomed Inform , :.Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet , :.Boser BE, Guyon I, Vapnik V: A Training Algorithm for Optimal Margin Classifiers. In COLT. Pittsburgh, PA USA; :.Hoerl A: Application of Ridge Evaluation to Regression Problems. Chem Engr Prog , :-.Cover T, Hart P: Nearest neighbor pattern classification. IEEE Trans Inform Th , :.Ben-Hur A, Noble WS: Kernel techniques for predicting protein-protein interactions. Bioinformatics , (Suppl):i–.Chen YW, Lin PubMed ID:http://www.ncbi.nlm.nih.gov/pubmed/24719379?dopt=Abstract CJ: Combining SVMs with Different Feature Choice Tactics. In Function Extraction: Foundations and Applications, ume of Research in Fuzziness and Soft Computing: Springer;. Chang CC, Lin CJ: LIBSVM: A Library for Support Vector Machines. ACM Trans Intell Syst Technol , :.Cadag E, Louie B, Myler PJ, Tarczy-Hornoch P: BioMediator Data Integration and Inference for Functional Annotation of Anonymous Sequences. In Pacific Symposium on Biocomputing. Edited by Altman RB, Dunker AK, Hunter L, Murray T, Klein T E: Globe Scientific; :.Liao L, Noble WS: Combining pairwise sequence similarity and help vector machines for remote protein homology detection. In RECOMB. Washington, DC USA; :.Ben-Hur A, Brutlag D: Remote homology detection: a motif based method. Bioinformatics , (Suppl):i–.Lanckriet GRG, De Bie T, Cristianini N, Jordan MI, Noble.

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